STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1580PFAM: inner-membrane translocator; KEGG: ank:AnaeK_1698 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (290 aa)    
Predicted Functional Partners:
Slit_1579
KEGG: ade:Adeh_2181 ABC branched-chain amino acid transporter, fused ATPase and inner-membrane subunits; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.999
Slit_2690
PFAM: inner-membrane translocator; KEGG: app:CAP2UW1_3610 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 0.998
Slit_1581
PFAM: Extracellular ligand-binding receptor; KEGG: ank:AnaeK_1699 extracellular ligand-binding receptor.
 
 
 0.997
Slit_2689
ABC transporter related protein; KEGG: mms:mma_2546 ABC-type branched-chain amino acid transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.993
Slit_2692
PFAM: Extracellular ligand-binding receptor; KEGG: app:CAP2UW1_3612 extracellular ligand-binding receptor.
 
 
 0.991
Slit_2687
ABC transporter related protein; KEGG: cvi:CV_1506 leucine/isoleucine/valine transport system ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.988
Slit_2691
PFAM: inner-membrane translocator; KEGG: app:CAP2UW1_3611 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.924
Slit_1812
KEGG: rso:RSc2293 hypothetical protein.
  
  
 0.559
Slit_1578
Putative adenylate/guanylate cyclase; KEGG: lbl:LBL_1826 adenylate cyclase-like protein.
       0.545
Slit_1582
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold domain protein; GGDEF domain containing protein; KEGG: pin:Ping_3129 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein.
       0.453
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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