Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_1597KEGG: pol:Bpro_1022 type I secretion outer membrane protein, TolC; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein. (453 aa)    
Predicted Functional Partners:
Slit_0933
KEGG: dar:Daro_0458 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.898
Slit_1598
KEGG: rfr:Rfer_2714 type I secretion membrane fusion protein, HlyD; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein.
 
 
 0.896
Slit_2617
PFAM: acriflavin resistance protein; KEGG: tbd:Tbd_2397 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.865
Slit_2618
KEGG: tbd:Tbd_2396 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.862
Slit_0934
PFAM: acriflavin resistance protein; KEGG: app:CAP2UW1_2665 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.846
Slit_2001
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; KEGG: cti:RALTA_A3188 component of acridine efflux pump, multidrug efflux system; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein.
  
 0.846
Slit_2002
Efflux transporter, RND family, MFP subunit; KEGG: har:HEAR2713 component of acridine efflux pump, AcrA-like; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.845
Slit_1599
Outer membrane adhesin like proteiin; SMART: Dystroglycan-type cadherin domain protein; manually curated; TIGRFAM: outer membrane adhesin like proteiin; KEGG: gur:Gura_2550 putative outer membrane adhesin like protein; PFAM: Peptidase M23; Hemolysin-type calcium-binding region; Ig family protein.
  
    0.774
Slit_2080
KEGG: neu:NE0828 HlyD family secretion protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.735
Slit_2511
Efflux transporter, RND family, MFP subunit; KEGG: sfu:Sfum_2390 secretion protein HlyD family protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.735
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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