Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1599Outer membrane adhesin like proteiin; SMART: Dystroglycan-type cadherin domain protein; manually curated; TIGRFAM: outer membrane adhesin like proteiin; KEGG: gur:Gura_2550 putative outer membrane adhesin like protein; PFAM: Peptidase M23; Hemolysin-type calcium-binding region; Ig family protein. (3778 aa)    
Predicted Functional Partners:
Slit_1598
KEGG: rfr:Rfer_2714 type I secretion membrane fusion protein, HlyD; TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein.
 
  
 0.945
Slit_1597
KEGG: pol:Bpro_1022 type I secretion outer membrane protein, TolC; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein.
  
    0.774
Slit_1605
KEGG: rfr:Rfer_2722 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase.
 
  
 0.763
Slit_1600
Hypothetical protein; KEGG: sus:Acid_3593 serine/threonine protein kinase.
  
    0.707
Slit_1601
KEGG: rfr:Rfer_2722 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.650
Slit_2580
KEGG: nmu:Nmul_A0176 cell division FtsK/SpoIIIE; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: DNA translocase ftsK gamma; AAA ATPase.
    
 
 0.499
Slit_2304
PFAM: Hemolysin-type calcium-binding region; KEGG: rfr:Rfer_2715 VCBS.
 
 
0.476
Slit_1752
PFAM: protein of unknown function DUF255; KEGG: tbd:Tbd_2727 hypothetical protein.
    
   0.429
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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