Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1604KEGG: gme:Gmet_2757 hypothetical protein. (87 aa)    
Predicted Functional Partners:
Slit_1603
PFAM: protein of unknown function DUF497; KEGG: gur:Gura_0788 hypothetical protein.
 
 
 0.966
Slit_0383
PFAM: protein of unknown function DUF497; KEGG: pph:Ppha_2521 hypothetical protein.
 
 
 0.770
Slit_1602
PFAM: protein of unknown function DUF1568; KEGG: app:CAP2UW1_1050 protein of unknown function DUF1568.
       0.546
Slit_0384
KEGG: pph:Ppha_2520 hypothetical protein.
  
     0.511
Slit_0088
KEGG: app:CAP2UW1_1572 PilT protein domain protein; manually curated; PFAM: PilT protein domain protein.
  
     0.487
Slit_2476
PFAM: protein of unknown function DUF433; KEGG: cyn:Cyan7425_0500 protein of unknown function DUF433.
 
     0.405
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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