Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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Score
Slit_1665PFAM: extracellular solute-binding protein family 1; KEGG: rfr:Rfer_3242 extracellular solute-binding protein. (347 aa)    
Predicted Functional Partners:
Slit_1194
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A0980 binding-protein dependent transport system inner membrane protein.
 
 0.986
Slit_1193
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A0981 binding-protein dependent transport system inner membrane protein.
 
  
 0.935
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.892
Slit_1195
Extracellular solute-binding protein family 1; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
  
     0.774
Slit_1666
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; histidine kinase HAMP region domain protein; GAF domain protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; KEGG: mfa:Mfla_2628 diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; PAS fold-4 domain protein; histidine kinase HAMP region domain protein; GGDEF domain containing protein; GAF domain protein.
  
    0.663
Slit_1664
PFAM: porin LamB type; KEGG: pna:Pnap_3690 maltoporin precursor.
 
     0.597
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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