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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1682KEGG: tbd:Tbd_2481 DsrH protein; TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH family protein. (98 aa)    
Predicted Functional Partners:
Slit_1683
KEGG: tgr:Tgr7_2188 sulfur relay protein TusC/DsrF; TIGRFAM: sulfur relay protein TusC/DsrF; PFAM: DsrE family protein.
 
 0.999
Slit_1684
KEGG: tbd:Tbd_2483 DsrE protein; TIGRFAM: sulfur relay protein TusD/DsrE; PFAM: DsrE family protein.
 
 0.999
Slit_1681
KEGG: tgr:Tgr7_2190 sulfur relay protein, TusE/DsrC/DsvC family; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein.
 
 0.968
Slit_1685
TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; KEGG: tbd:Tbd_2484 sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein.
 
     0.934
Slit_1686
TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; KEGG: tbd:Tbd_2485 sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region.
 
     0.921
Slit_1677
KEGG: tbd:Tbd_2476 hypothetical protein.
 
     0.915
Slit_1680
PFAM: Nitrate reductase gamma subunit; KEGG: tbd:Tbd_2479 putative DsrM protein.
 
     0.915
Slit_1675
PFAM: Polysulphide reductase NrfD; KEGG: vok:COSY_0784 intracellular sulfur oxidation protein DsrP.
 
     0.911
Slit_1679
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: tbd:Tbd_2478 reductase, iron-sulfur binding subunit, putative.
 
     0.902
Slit_1678
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tbd:Tbd_2477 putative glutamate synthase (NADPH) small subunit.
 
   
 0.870
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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