Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_1687KEGG: tbd:Tbd_2486 hypothetical protein. (71 aa)    
Predicted Functional Partners:
Slit_1688
KEGG: mxa:MXAN_7265 CRISPR-associated Cas6 family protein; TIGRFAM: CRISPR-associated protein, Cas6-related; PFAM: CRISPR-associated protein Cas6-related.
       0.773
Slit_1689
Manually curated; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; KEGG: tbd:Tbd_2488 putative sulfite reductase gamma chain; PFAM: DsrC family protein.
       0.693
Slit_1692
KEGG: tbd:Tbd_2491 hypothetical protein.
       0.684
Slit_1690
PFAM: SirA family protein; KEGG: pvi:Cvib_0036 SirA family protein; Belongs to the sulfur carrier protein TusA family.
       0.670
Slit_1691
KEGG: tbd:Tbd_2490 hypothetical protein.
       0.670
Slit_1693
PFAM: glutaredoxin; KEGG: dar:Daro_1103 glutaredoxin family protein.
       0.439
Slit_1686
TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; KEGG: tbd:Tbd_2485 sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region.
       0.409
Slit_1685
TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; KEGG: tbd:Tbd_2484 sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein.
       0.404
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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