STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1693PFAM: glutaredoxin; KEGG: dar:Daro_1103 glutaredoxin family protein. (129 aa)    
Predicted Functional Partners:
Slit_2631
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 0.734
Slit_2241
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
 0.551
Slit_0866
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: lch:Lcho_1553 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
  
 
 0.533
Slit_1690
PFAM: SirA family protein; KEGG: pvi:Cvib_0036 SirA family protein; Belongs to the sulfur carrier protein TusA family.
       0.497
Slit_1691
KEGG: tbd:Tbd_2490 hypothetical protein.
       0.497
Slit_1692
KEGG: tbd:Tbd_2491 hypothetical protein.
       0.497
Slit_1689
Manually curated; TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; KEGG: tbd:Tbd_2488 putative sulfite reductase gamma chain; PFAM: DsrC family protein.
       0.482
Slit_1687
KEGG: tbd:Tbd_2486 hypothetical protein.
       0.439
Slit_1688
KEGG: mxa:MXAN_7265 CRISPR-associated Cas6 family protein; TIGRFAM: CRISPR-associated protein, Cas6-related; PFAM: CRISPR-associated protein Cas6-related.
       0.439
Slit_2429
PFAM: protein of unknown function DUF1332; KEGG: rfr:Rfer_1818 hypothetical protein.
  
     0.429
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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