STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1695PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dar:Daro_4041 YeeE/YedE. (370 aa)    
Predicted Functional Partners:
Slit_1696
PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; KEGG: mms:mma_0453 sulfur oxidation protein SoxB; Belongs to the 5'-nucleotidase family.
 
     0.889
Slit_1694
PFAM: Domain of unknown function DUF1791; KEGG: hna:Hneap_0173 domain of unknown function DUF1791.
 
   
 0.855
Slit_1698
PFAM: Sulphur oxidation protein SoxZ; KEGG: tbd:Tbd_0565 sulfur compound chelating protein SoxZ.
 
   
 0.853
Slit_1697
KEGG: tbd:Tbd_0918 diheme cytochrome SoxA (sulfur oxidation).
 
  
 0.850
Slit_1699
KEGG: tbd:Tbd_0566 transmembrane proetin, twin-arginine translocation pathway signal.
 
     0.843
Slit_1700
PFAM: cytochrome c class I; KEGG: tbd:Tbd_0917 monoheme cytochrome SoxX (sulfur oxidation).
 
     0.768
Slit_1703
KEGG: tgr:Tgr7_1401 hypothetical protein.
 
     0.711
Slit_2020
SMART: Rhodanese domain protein; KEGG: hna:Hneap_1028 rhodanese domain protein.
 
  
 0.677
Slit_0711
KEGG: har:HEAR0707 hypothetical protein.
 
     0.485
Slit_0712
Exodeoxyribonuclease V; KEGG: tbd:Tbd_0033 DNA helicase/exodeoxyribonuclease V, subunit A; PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
 
     0.404
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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