STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1701Putative transmembrane anti-sigma factor; PFAM: Domain of unknown function DUF1791; KEGG: tbd:Tbd_1835 hypothetical protein. (248 aa)    
Predicted Functional Partners:
Slit_1702
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: tbd:Tbd_1836 sigma-24 (FecI); TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
       0.792
Slit_1699
KEGG: tbd:Tbd_0566 transmembrane proetin, twin-arginine translocation pathway signal.
  
    0.509
Slit_1703
KEGG: tgr:Tgr7_1401 hypothetical protein.
       0.484
Slit_1700
PFAM: cytochrome c class I; KEGG: tbd:Tbd_0917 monoheme cytochrome SoxX (sulfur oxidation).
       0.483
Slit_1698
PFAM: Sulphur oxidation protein SoxZ; KEGG: tbd:Tbd_0565 sulfur compound chelating protein SoxZ.
  
    0.420
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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