STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1708Sulfate transporter; KEGG: tmz:Tmz1t_1634 sulphate transporter; TIGRFAM: sulfate transporter; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS. (568 aa)    
Predicted Functional Partners:
Slit_0028
KEGG: dvm:DvMF_0391 carbonate dehydratase; PFAM: carbonic anhydrase.
 
  
 0.902
Slit_0488
KEGG: rpf:Rpic12D_3511 hypothetical protein.
    
   0.769
Slit_0131
Cytochrome b/b6 domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 
 0.747
Slit_0066
KEGG: dar:Daro_0054 ammonium transporter; TIGRFAM: ammonium transporter; PFAM: ammonium transporter.
    
 
 0.653
Slit_1085
PFAM: ammonium transporter; KEGG: rme:Rmet_4750 Rh-like protein/ammonium transporter.
    
 
 0.653
Slit_2198
KEGG: app:CAP2UW1_3892 adenylate/guanylate cyclase; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; Ankyrin; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; Ankyrin.
    
 
 0.637
Slit_1082
KEGG: nmu:Nmul_A1103 NADH dehydrogenase subunit M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
  
 
 0.613
Slit_1710
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tgr:Tgr7_0339 putative iron-sulfur cluster-binding protein.
     
 0.606
Slit_1709
PFAM: DMSO reductase anchor subunit (DmsC); KEGG: tgr:Tgr7_0338 hypothetical protein.
       0.588
Slit_1711
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: tgr:Tgr7_0340 putative molybdopterin oxidoreductase family protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   
 0.585
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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