Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_1710PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tgr:Tgr7_0339 putative iron-sulfur cluster-binding protein. (243 aa)    
Predicted Functional Partners:
Slit_1711
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: tgr:Tgr7_0340 putative molybdopterin oxidoreductase family protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.997
Slit_1709
PFAM: DMSO reductase anchor subunit (DmsC); KEGG: tgr:Tgr7_0338 hypothetical protein.
 
 
 0.995
Slit_0641
Molybdopterin dinucleotide-binding region; KEGG: gur:Gura_2777 nitrate reductase; manually curated; PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.982
sat
TIGRFAM: sulfate adenylyltransferase; KEGG: tgr:Tgr7_0353 sulfate adenylyltransferase; PFAM: ATP-sulfurylase; Belongs to the sulfate adenylyltransferase family.
    
 0.941
Slit_1715
Adenylylsulfate reductase, alpha subunit; KEGG: tgr:Tgr7_0350 adenylylsulfate reductase; TIGRFAM: adenylylsulfate reductase, alpha subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
  
 
 0.937
Slit_2433
PFAM: restriction endonuclease; DNA topoisomerase type IA zn finger domain protein; KEGG: eba:ebA67 hypothetical protein.
   
    0.935
Slit_1700
PFAM: cytochrome c class I; KEGG: tbd:Tbd_0917 monoheme cytochrome SoxX (sulfur oxidation).
   
  0.932
Slit_1678
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tbd:Tbd_2477 putative glutamate synthase (NADPH) small subunit.
    
 0.927
Slit_1714
KEGG: tgr:Tgr7_0351 adenylylsulfate reductase, beta subunit; TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein.
    
 0.927
Slit_1685
TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; KEGG: tbd:Tbd_2484 sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein.
  
 
 0.907
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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