Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Slit_1716KEGG: rma:Rmag_0089 hypothetical protein. (116 aa)    
Predicted Functional Partners:
Slit_1717
KEGG: tgr:Tgr7_0348 putative peptidyl-prolyl cis-trans isomerase.
       0.703
Slit_1718
Hypothetical protein; KEGG: mno:Mnod_8810 tetratricopeptide domain protein.
       0.689
Slit_1719
Histidine triad (HIT) protein; KEGG: swo:Swol_1000 hypothetical protein; manually curated; PFAM: histidine triad (HIT) protein.
       0.653
Slit_1714
KEGG: tgr:Tgr7_0351 adenylylsulfate reductase, beta subunit; TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein.
       0.505
Slit_1720
KEGG: tgr:Tgr7_0343 hypothetical protein.
       0.470
Slit_1715
Adenylylsulfate reductase, alpha subunit; KEGG: tgr:Tgr7_0350 adenylylsulfate reductase; TIGRFAM: adenylylsulfate reductase, alpha subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
       0.459
Slit_1713
KEGG: tbd:Tbd_2284 hypothetical protein.
       0.438
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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