Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Slit_1749KEGG: pna:Pnap_4960 hypothetical protein. (210 aa)    
Predicted Functional Partners:
Slit_1748
PFAM: protein of unknown function DUF214; KEGG: nmu:Nmul_A0948 hypothetical protein.
       0.773
Slit_1750
KEGG: nmu:Nmul_A1972 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.773
Slit_1751
Arylesterase; KEGG: mfa:Mfla_1250 arylesterase; PFAM: lipolytic protein G-D-S-L family.
       0.570
Slit_1752
PFAM: protein of unknown function DUF255; KEGG: tbd:Tbd_2727 hypothetical protein.
       0.570
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.501
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
       0.458
Slit_1746
Single-strand binding protein/primosomal replication protein N; Binds single-stranded DNA at the primosome assembly site (PAS).
       0.458
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
       0.455
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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