STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1759KEGG: ppr:PBPRB1987 hypothetical protein. (933 aa)    
Predicted Functional Partners:
bamB
Outer membrane assembly lipoprotein YfgL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.853
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.835
Slit_2289
Hypothetical protein; KEGG: rme:Rmet_1069 putative transmembrane protein.
   
 
 0.833
Slit_0057
KEGG: mfa:Mfla_0379 peptidylprolyl isomerase; PFAM: peptidylprolyl isomerase FKBP-type.
   
 
 0.706
Slit_0058
KEGG: chl:Chy400_0933 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type.
   
 
 0.706
Slit_1644
TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: nmu:Nmul_A0664 peptidase M50, putative membrane-associated zinc metallopeptidase; SMART: PDZ/DHR/GLGF domain protein.
  
  
 0.689
lptE
Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
    
 
 0.653
Slit_1642
PFAM: outer membrane chaperone Skp (OmpH); KEGG: tbd:Tbd_0794 putative outer membrane protein; Belongs to the skp family.
  
  
 0.630
Slit_1705
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: mei:Msip34_2161 membrane protein involved in aromatic hydrocarbon degradation.
    
 
 0.608
Slit_1857
PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: rfr:Rfer_2706 membrane protein involved in aromatic hydrocarbon degradation.
    
 
 0.608
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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