STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1779Methyltransferase; KEGG: noc:Noc_2028 hypothetical protein; TIGRFAM: methyltransferase; PFAM: Protein of unknown function DUF2260. (329 aa)    
Predicted Functional Partners:
Slit_1778
PFAM: protein of unknown function DUF323; KEGG: psa:PST_1444 hypothetical protein.
  
 0.996
Slit_1777
PFAM: protein of unknown function DUF427; KEGG: cyb:CYB_0069 hypothetical protein.
 
     0.878
Slit_1780
PFAM: protein of unknown function DUF6 transmembrane; KEGG: eba:ebA4464 hypothetical protein.
       0.757
Slit_2647
Non-specific serine/threonine protein kinase; KEGG: tcu:Tcur_0052 protein of unknown function DUF323; PFAM: protein of unknown function DUF323.
  
 0.722
Slit_1776
KEGG: vfm:VFMJ11_0290 hypothetical protein.
       0.479
Slit_1849
KEGG: app:CAP2UW1_3061 putative lipoprotein transmembrane.
  
  
 0.427
dtd
D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.
       0.422
Slit_1352
PFAM: protein of unknown function DUF323; KEGG: mag:amb1714 hypothetical protein.
 
  
 0.418
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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