STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1812KEGG: rso:RSc2293 hypothetical protein. (535 aa)    
Predicted Functional Partners:
Slit_1579
KEGG: ade:Adeh_2181 ABC branched-chain amino acid transporter, fused ATPase and inner-membrane subunits; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.975
Slit_1813
PFAM: electron transport protein SCO1/SenC; KEGG: rso:RSc2292 putative transmembrane protein.
       0.735
Slit_0154
PFAM: Nitrate and nitrite sensing domain protein; ANTAR domain protein; KEGG: mfa:Mfla_0329 response regulator receiver/ANTAR domain-containing protein.
  
 
 0.729
Slit_1814
KEGG: rso:RSc2295 putative signal peptide protein.
       0.685
Slit_1815
KEGG: rme:Rmet_4699 putative transmembrane protein.
       0.680
Slit_1816
PFAM: multicopper oxidase type 3; KEGG: rme:Rmet_4700 putative signal peptide protein.
       0.675
Slit_1817
PFAM: multicopper oxidase type 3; KEGG: rme:Rmet_4701 multicopper oxidase, type 3.
  
  
 0.609
Slit_2690
PFAM: inner-membrane translocator; KEGG: app:CAP2UW1_3610 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.609
Slit_1818
PFAM: multicopper oxidase type 2; KEGG: rme:Rmet_4702 multicopper oxidase, type 3.
  
    0.605
Slit_1580
PFAM: inner-membrane translocator; KEGG: ank:AnaeK_1698 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.531
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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