Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Experiments
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[Homology]
Score
Slit_1817PFAM: multicopper oxidase type 3; KEGG: rme:Rmet_4701 multicopper oxidase, type 3. (520 aa)    
Predicted Functional Partners:
Slit_1818
PFAM: multicopper oxidase type 2; KEGG: rme:Rmet_4702 multicopper oxidase, type 3.
 
   
 0.949
Slit_1816
PFAM: multicopper oxidase type 3; KEGG: rme:Rmet_4700 putative signal peptide protein.
 
    
0.782
Slit_1814
KEGG: rso:RSc2295 putative signal peptide protein.
 
     0.776
tatC
Sec-independent protein translocase, TatC subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
    
 
 0.741
Slit_1813
PFAM: electron transport protein SCO1/SenC; KEGG: rso:RSc2292 putative transmembrane protein.
 
   
 0.724
tatB
Twin-arginine translocation protein, TatB subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
    
 
 0.723
Slit_1815
KEGG: rme:Rmet_4699 putative transmembrane protein.
       0.684
Slit_2530
KEGG: tcx:Tcr_2102 hypothetical protein.
   
 
 0.640
Slit_1812
KEGG: rso:RSc2293 hypothetical protein.
  
  
 0.616
Slit_1160
KEGG: mgm:Mmc1_3164 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein.
  
 
 0.566
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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