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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1817PFAM: multicopper oxidase type 3; KEGG: rme:Rmet_4701 multicopper oxidase, type 3. (520 aa)    
Predicted Functional Partners:
Slit_1818
PFAM: multicopper oxidase type 2; KEGG: rme:Rmet_4702 multicopper oxidase, type 3.
 
   
 0.949
Slit_1816
PFAM: multicopper oxidase type 3; KEGG: rme:Rmet_4700 putative signal peptide protein.
 
   
0.783
Slit_1814
KEGG: rso:RSc2295 putative signal peptide protein.
 
     0.777
Slit_1813
PFAM: electron transport protein SCO1/SenC; KEGG: rso:RSc2292 putative transmembrane protein.
 
   
 0.724
Slit_2530
KEGG: tcx:Tcr_2102 hypothetical protein.
   
 
 0.707
Slit_1815
KEGG: rme:Rmet_4699 putative transmembrane protein.
       0.685
tatC
Sec-independent protein translocase, TatC subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
    
 
 0.681
tatB
Twin-arginine translocation protein, TatB subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
    
 
 0.679
Slit_1868
TIGRFAM: copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: E1-E2 ATPase-associated domain protein; YHS domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: sat:SYN_02351 cation transport ATPase; SMART: TRASH domain protein.
 
  
 0.610
Slit_1812
KEGG: rso:RSc2293 hypothetical protein.
  
  
 0.609
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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