Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1829KEGG: tbd:Tbd_1296 hypothetical protein. (267 aa)    
Predicted Functional Partners:
Slit_1830
PFAM: type II secretion system protein E; KEGG: tbd:Tbd_1295 type II secretion system protein.
       0.788
Slit_1831
PFAM: Type II secretion system F domain; KEGG: tbd:Tbd_1294 type II secretion system protein F.
       0.786
Slit_1832
KEGG: nmu:Nmul_A2590 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G.
       0.744
Slit_1828
KEGG: hypothetical protein.
  
    0.655
Slit_1822
KEGG: tbd:Tbd_1303 hypothetical protein.
       0.646
Slit_1824
KEGG: lch:Lcho_3885 hypothetical protein.
       0.646
Slit_1825
PFAM: type II and III secretion system protein; NolW domain protein; cellulosome anchoring protein cohesin region; Secretin/TonB short domain; KEGG: rso:RS02977 putative GspD-related protein.
       0.646
Slit_1823
PFAM: type II secretion system protein G; KEGG: mfa:Mfla_1334 methylation.
       0.608
Slit_1826
KEGG: tbd:Tbd_1299 prolin-rich transmembrane protein.
       0.608
Slit_1827
KEGG: avn:Avin_29120 hypothetical protein.
       0.608
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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