Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_1830PFAM: type II secretion system protein E; KEGG: tbd:Tbd_1295 type II secretion system protein. (561 aa)    
Predicted Functional Partners:
Slit_1831
PFAM: Type II secretion system F domain; KEGG: tbd:Tbd_1294 type II secretion system protein F.
 
   0.970
Slit_2073
KEGG: dar:Daro_1151 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
  
  
 
0.919
Slit_0498
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
  
 
0.912
Slit_1825
PFAM: type II and III secretion system protein; NolW domain protein; cellulosome anchoring protein cohesin region; Secretin/TonB short domain; KEGG: rso:RS02977 putative GspD-related protein.
 
 
 
 0.892
Slit_1832
KEGG: nmu:Nmul_A2590 general secretion pathway protein G; TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G.
 
 
 0.876
Slit_1824
KEGG: lch:Lcho_3885 hypothetical protein.
 
   0.875
Slit_0497
KEGG: cvi:CV_3812 general secretion pathway protein F; TIGRFAM: general secretion pathway protein F; PFAM: Type II secretion system F domain.
 
   0.874
Slit_0684
PFAM: Type II secretion system F domain; KEGG: dar:Daro_3408 type II secretion system protein.
 
   0.872
Slit_1823
PFAM: type II secretion system protein G; KEGG: mfa:Mfla_1334 methylation.
 
 
 0.872
Slit_2699
PFAM: Type II secretion system F domain; KEGG: mei:Msip34_0586 type II secretion system protein.
 
   0.872
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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