STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1853PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: bur:Bcep18194_A4872 glutathione-dependent formaldehyde-activating, GFA. (118 aa)    
Predicted Functional Partners:
Slit_1851
PFAM: protein of unknown function DUF86; KEGG: app:CAP2UW1_0718 protein of unknown function DUF86.
       0.624
Slit_1852
PFAM: DNA polymerase beta domain protein region; KEGG: app:CAP2UW1_0719 DNA polymerase beta domain protein region.
       0.624
Slit_1850
TIGRFAM: acetyl-CoA acetyltransferase; KEGG: neu:NE1527 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
    0.588
Slit_1849
KEGG: app:CAP2UW1_3061 putative lipoprotein transmembrane.
 
     0.527
Slit_2332
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: tbd:Tbd_1204 PhnB protein.
  
    0.522
Slit_0115
KEGG: mei:Msip34_2803 glutamate synthase (ferredoxin); PFAM: glutamate synthase; ferredoxin-dependent glutamate synthase; glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein.
     
 0.507
Slit_1854
Hypothetical protein; KEGG: vpa:VP2135 putative phage-related protein.
       0.447
Slit_1855
PFAM: ATP-binding region ATPase domain protein; KEGG: sde:Sde_2747 hypothetical protein.
       0.447
Slit_1848
KEGG: pna:Pnap_2842 hypothetical protein.
       0.445
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.