Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_1878PFAM: cytochrome c class I; KEGG: tbd:Tbd_0128 putative cytochrome c. (301 aa)    
Predicted Functional Partners:
Slit_1877
PFAM: cytochrome c class I; KEGG: tbd:Tbd_0129 cytochrome c-type protein.
  
 0.993
Slit_1700
PFAM: cytochrome c class I; KEGG: tbd:Tbd_0917 monoheme cytochrome SoxX (sulfur oxidation).
   
 0.937
Slit_1696
PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; KEGG: mms:mma_0453 sulfur oxidation protein SoxB; Belongs to the 5'-nucleotidase family.
    
 0.916
Slit_1698
PFAM: Sulphur oxidation protein SoxZ; KEGG: tbd:Tbd_0565 sulfur compound chelating protein SoxZ.
    
 0.916
Slit_1699
KEGG: tbd:Tbd_0566 transmembrane proetin, twin-arginine translocation pathway signal.
    
 0.916
Slit_1697
KEGG: tbd:Tbd_0918 diheme cytochrome SoxA (sulfur oxidation).
     
  0.900
Slit_2657
PFAM: cytochrome c class I; KEGG: tbd:Tbd_0129 cytochrome c-type protein.
  
 0.713
Slit_1675
PFAM: Polysulphide reductase NrfD; KEGG: vok:COSY_0784 intracellular sulfur oxidation protein DsrP.
     
 0.548
Slit_2494
KEGG: mgm:Mmc1_0336 transmembrane region and signal peptide prediction.
 
 
 
 0.471
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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