Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1898PFAM: Baseplate J family protein; KEGG: acr:Acry_2524 baseplate J family protein. (373 aa)    
Predicted Functional Partners:
Slit_1908
KEGG: acr:Acry_2515 hypothetical protein.
 
 
 0.979
Slit_1902
KEGG: bgl:bglu_1g20350 hypothetical protein.
  
   0.950
Slit_1901
KEGG: bgl:bglu_1g20340 hypothetical protein.
  
    0.855
Slit_0213
KEGG: bcj:BCAL1580 hypothetical protein.
  
 
 0.794
Slit_1897
KEGG: xfa:XF2317 hypothetical protein.
       0.793
Slit_1899
KEGG: bgl:bglu_1g20320 putative phage tail protein.
       0.793
Slit_1900
KEGG: acr:Acry_2522 phage baseplate assembly protein V.
     
 0.783
Slit_0007
KEGG: mfa:Mfla_0188 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
  
   0.780
Slit_1903
Hypothetical protein; KEGG: rso:RSc1914 phage-related tail transmembrane protein.
       0.778
Slit_0241
PFAM: Mu P family protein; KEGG: bvi:Bcep1808_1291 bacteriophage Mu P family protein.
 
    0.639
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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