STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1900KEGG: acr:Acry_2522 phage baseplate assembly protein V. (195 aa)    
Predicted Functional Partners:
Slit_1898
PFAM: Baseplate J family protein; KEGG: acr:Acry_2524 baseplate J family protein.
     
 0.795
Slit_1902
KEGG: bgl:bglu_1g20350 hypothetical protein.
  
    0.793
Slit_1899
KEGG: bgl:bglu_1g20320 putative phage tail protein.
       0.789
Slit_1903
Hypothetical protein; KEGG: rso:RSc1914 phage-related tail transmembrane protein.
       0.787
Slit_1897
KEGG: xfa:XF2317 hypothetical protein.
       0.781
Slit_1901
KEGG: bgl:bglu_1g20340 hypothetical protein.
       0.781
Slit_1896
KEGG: xfa:XF2318 hypothetical protein.
       0.615
Slit_1895
KEGG: hypothetical protein.
       0.608
Slit_1908
KEGG: acr:Acry_2515 hypothetical protein.
     
 0.483
Slit_0573
TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; Flagellar protein FlgJ-like; KEGG: tbd:Tbd_1629 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2.
     
 0.467
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.