Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1902KEGG: bgl:bglu_1g20350 hypothetical protein. (261 aa)    
Predicted Functional Partners:
Slit_1898
PFAM: Baseplate J family protein; KEGG: acr:Acry_2524 baseplate J family protein.
  
   0.950
Slit_1908
KEGG: acr:Acry_2515 hypothetical protein.
  
 
 0.913
Slit_1901
KEGG: bgl:bglu_1g20340 hypothetical protein.
  
  
 0.856
Slit_1899
KEGG: bgl:bglu_1g20320 putative phage tail protein.
       0.793
Slit_1897
KEGG: xfa:XF2317 hypothetical protein.
       0.791
Slit_0213
KEGG: bcj:BCAL1580 hypothetical protein.
  
 
 0.790
Slit_1900
KEGG: acr:Acry_2522 phage baseplate assembly protein V.
  
    0.790
Slit_0244
PFAM: Baseplate J family protein; KEGG: lhk:LHK_01145 probable phage FluMu protein GP47.
  
   0.780
Slit_1903
Hypothetical protein; KEGG: rso:RSc1914 phage-related tail transmembrane protein.
       0.778
Slit_0112
Type IV pilus secretin PilQ; KEGG: azo:azo3646 type 4 fimbrial biogenesis protein; TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain.
    
   0.692
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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