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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1908KEGG: acr:Acry_2515 hypothetical protein. (511 aa)    
Predicted Functional Partners:
Slit_1898
PFAM: Baseplate J family protein; KEGG: acr:Acry_2524 baseplate J family protein.
 
 
 0.973
Slit_0213
KEGG: bcj:BCAL1580 hypothetical protein.
  
 
 0.940
Slit_0244
PFAM: Baseplate J family protein; KEGG: lhk:LHK_01145 probable phage FluMu protein GP47.
 
 
 0.917
Slit_1902
KEGG: bgl:bglu_1g20350 hypothetical protein.
  
 
 0.886
Slit_0007
KEGG: mfa:Mfla_0188 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
  
 
 0.847
Slit_0247
KEGG: aav:Aave_1726 hypothetical protein.
  
  
 0.777
Slit_0241
PFAM: Mu P family protein; KEGG: bvi:Bcep1808_1291 bacteriophage Mu P family protein.
 
    0.664
Slit_1904
TIGRFAM: phage protein, HK97 gp10 family; KEGG: rso:RSc2479 bacteriophage-like protein.
  
    0.646
Slit_1907
KEGG: acr:Acry_2516 hypothetical protein.
       0.645
Slit_1910
KEGG: bgl:bglu_1g20410 hypothetical protein.
       0.626
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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