STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1920KEGG: bgl:bglu_1g20470 hypothetical protein. (102 aa)    
Predicted Functional Partners:
Slit_1921
PFAM: portal protein; KEGG: bgl:bglu_1g20480 hypothetical protein.
       0.773
Slit_1922
Phage uncharacterized protein; KEGG: gbe:GbCGDNIH1_1583 large terminase subunit; TIGRFAM: phage uncharacterized protein; PFAM: protein of unknown function DUF264.
       0.737
Slit_1923
PFAM: Protein of unknown function DUF2280; KEGG: mlo:mlr8001 hypothetical protein.
       0.737
Slit_1918
KEGG: ljf:FI9785_460 hypothetical protein.
       0.675
Slit_1919
KEGG: rer:RER_19080 hypothetical protein.
       0.675
Slit_1917
KEGG: hypothetical protein.
       0.670
Slit_1924
KEGG: mrd:Mrad2831_5698 hypothetical protein.
       0.640
Slit_1916
KEGG: bgl:bglu_1g20460 hypothetical protein.
       0.514
Slit_1915
KEGG: bgl:bglu_1g20450 hypothetical protein.
       0.462
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.