STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1957Hypothetical protein; KEGG: similar to WD repeat domain 36. (198 aa)    
Predicted Functional Partners:
Slit_1953
PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: npu:Npun_F4892 RNA-directed DNA polymerase (reverse transcriptase).
       0.773
Slit_1954
Hypothetical protein.
       0.773
Slit_1955
PFAM: C-5 cytosine-specific DNA methylase; KEGG: pjd:Pjdr2_1600 C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
       0.773
Slit_1956
PFAM: phosphoadenosine phosphosulfate reductase; KEGG: mrd:Mrad2831_5743 phosphoadenosine phosphosulfate reductase.
       0.773
Slit_1958
KEGG: eoi:ECO111_p2-102 hypothetical protein.
       0.773
Slit_1959
PFAM: Gp37Gp68 family protein; KEGG: nfa:nfa39500 hypothetical protein.
       0.773
Slit_1960
PFAM: protein of unknown function DUF1643; KEGG: dsh:Dshi_2991 hypothetical protein.
       0.773
Slit_1961
KEGG: eba:p1B17 hypothetical protein.
       0.463
Slit_1962
KEGG: sal:Sala_2989 hypothetical protein.
       0.463
Slit_1963
KEGG: bpt:Bpet0945 hypothetical protein.
       0.463
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.