STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1964KEGG: hypothetical protein. (100 aa)    
Predicted Functional Partners:
Slit_1961
KEGG: eba:p1B17 hypothetical protein.
       0.773
Slit_1962
KEGG: sal:Sala_2989 hypothetical protein.
       0.773
Slit_1963
KEGG: bpt:Bpet0945 hypothetical protein.
       0.773
Slit_1965
KEGG: mfa:Mfla_2424 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n.
       0.543
Slit_1966
KEGG: hypothetical protein LOC100024879.
       0.543
Slit_1967
Manually curated; KEGG: eba:ebA531 hypothetical protein.
       0.543
Slit_1968
Resolvase domain protein; KEGG: eba:ebA532 site-specific recombinases; PFAM: Resolvase domain; Recombinase; SMART: Resolvase domain.
       0.536
Slit_1953
PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: npu:Npun_F4892 RNA-directed DNA polymerase (reverse transcriptase).
       0.463
Slit_1954
Hypothetical protein.
       0.463
Slit_1955
PFAM: C-5 cytosine-specific DNA methylase; KEGG: pjd:Pjdr2_1600 C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
       0.463
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.