STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1982PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A2332 binding-protein dependent transport system inner membrane protein. (450 aa)    
Predicted Functional Partners:
Slit_1981
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: nmu:Nmul_A2331 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.999
Slit_1983
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: app:CAP2UW1_3046 binding-protein-dependent transport systems inner membrane component.
 
 0.999
Slit_1984
PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: lil:LB070 hypothetical protein.
       0.527
Slit_1978
KEGG: dar:Daro_0126 hypothetical protein.
       0.510
Slit_1979
PFAM: Protein of unknown function DUF2311, membrane; KEGG: mmb:Mmol_0026 putative transmembrane protein.
       0.510
Slit_1980
PFAM: protein of unknown function DUF883 ElaB; KEGG: azo:azo3667 hypothetical protein.
       0.510
Slit_1579
KEGG: ade:Adeh_2181 ABC branched-chain amino acid transporter, fused ATPase and inner-membrane subunits; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.
     
 0.491
Slit_1985
PFAM: DSBA oxidoreductase; KEGG: gym:GYMC10_4000 DsbA oxidoreductase.
       0.470
Slit_1990
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: nmu:Nmul_A1226 ErfK/YbiS/YcfS/YnhG.
 
     0.418
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
  
 0.413
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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