STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1983PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: app:CAP2UW1_3046 binding-protein-dependent transport systems inner membrane component. (325 aa)    
Predicted Functional Partners:
Slit_1981
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: nmu:Nmul_A2331 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 0.999
Slit_1982
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A2332 binding-protein dependent transport system inner membrane protein.
 0.999
Slit_1984
PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: lil:LB070 hypothetical protein.
       0.527
Slit_1978
KEGG: dar:Daro_0126 hypothetical protein.
       0.510
Slit_1979
PFAM: Protein of unknown function DUF2311, membrane; KEGG: mmb:Mmol_0026 putative transmembrane protein.
       0.510
Slit_1980
PFAM: protein of unknown function DUF883 ElaB; KEGG: azo:azo3667 hypothetical protein.
       0.510
Slit_1579
KEGG: ade:Adeh_2181 ABC branched-chain amino acid transporter, fused ATPase and inner-membrane subunits; PFAM: ABC transporter related; inner-membrane translocator; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.486
Slit_1985
PFAM: DSBA oxidoreductase; KEGG: gym:GYMC10_4000 DsbA oxidoreductase.
       0.470
cysG
uroporphyrin-III C-methyltransferase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family.
     
 0.400
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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