Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_1984PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: lil:LB070 hypothetical protein. (212 aa)    
Predicted Functional Partners:
Slit_1985
PFAM: DSBA oxidoreductase; KEGG: gym:GYMC10_4000 DsbA oxidoreductase.
 
     0.730
Slit_1981
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; KEGG: nmu:Nmul_A2331 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
     
 0.533
Slit_1982
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nmu:Nmul_A2332 binding-protein dependent transport system inner membrane protein.
       0.527
Slit_1983
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: app:CAP2UW1_3046 binding-protein-dependent transport systems inner membrane component.
       0.527
Slit_2325
PFAM: bifunctional deaminase-reductase domain protein; KEGG: rfr:Rfer_2843 bifunctional deaminase-reductase-like.
  
     0.414
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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