STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1992KEGG: net:Neut_0487 channel protein, hemolysin III family protein; TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein. (222 aa)    
Predicted Functional Partners:
Slit_1052
KEGG: chu:CHU_3405 hypothetical protein.
    
 0.734
Slit_1994
KEGG: nmu:Nmul_A1946 PhoH-like protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc.
       0.627
msrB
TIGRFAM: methionine-R-sulfoxide reductase; KEGG: nmu:Nmul_A2110 protein-methionine-S-oxide reductase; PFAM: Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family.
  
  
 0.611
Slit_1993
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: bph:Bphy_0921 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
       0.568
Slit_1995
PFAM: Glutathione S-transferase domain; KEGG: neu:NE1952 putative glutathione S-transferase protein.
       0.564
tadA
CMP/dCMP deaminase zinc-binding protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
  
    0.530
Slit_1990
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: nmu:Nmul_A1226 ErfK/YbiS/YcfS/YnhG.
       0.517
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.507
Slit_1989
PFAM: GCN5-related N-acetyltransferase; KEGG: nmu:Nmul_A0440 GCN5-related N-acetyltransferase.
       0.491
Slit_1997
Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
       0.461
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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