STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_1997Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family. (181 aa)    
Predicted Functional Partners:
msrB
TIGRFAM: methionine-R-sulfoxide reductase; KEGG: nmu:Nmul_A2110 protein-methionine-S-oxide reductase; PFAM: Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family.
  
    0.702
Slit_1858
PFAM: thioesterase superfamily protein; KEGG: bvi:Bcep1808_2816 thioesterase superfamily protein.
      0.693
Slit_1998
PFAM: YCII-related; KEGG: ecw:EcE24377A_1399 YciI-like protein.
       0.660
Slit_1994
KEGG: nmu:Nmul_A1946 PhoH-like protein; PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc.
       0.620
Slit_1995
PFAM: Glutathione S-transferase domain; KEGG: neu:NE1952 putative glutathione S-transferase protein.
       0.620
Slit_1993
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: bph:Bphy_0921 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
       0.616
Slit_2975
PFAM: import inner membrane translocase subunit Tim44; KEGG: mmb:Mmol_2092 import inner membrane translocase subunit Tim44.
  
    0.576
Slit_1999
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: nmu:Nmul_A2114 PpiC-type peptidyl-prolyl cis-trans isomerase.
       0.512
Slit_1992
KEGG: net:Neut_0487 channel protein, hemolysin III family protein; TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein.
       0.461
secB
Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
  
     0.452
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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