Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Slit_1999PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: nmu:Nmul_A2114 PpiC-type peptidyl-prolyl cis-trans isomerase. (261 aa)    
Predicted Functional Partners:
Slit_1998
PFAM: YCII-related; KEGG: ecw:EcE24377A_1399 YciI-like protein.
       0.645
Slit_1997
Intracellular septation protein A; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
       0.539
Slit_0812
KEGG: app:CAP2UW1_4379 nitrogen fixation protein NifM; TIGRFAM: nitrogen fixation protein NifM; PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase.
  
     0.486
Slit_2289
Hypothetical protein; KEGG: rme:Rmet_1069 putative transmembrane protein.
  
 
 0.456
Slit_2486
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; Pyruvate/ketoisovalerate oxidoreductase; KEGG: hha:Hhal_0066 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
   
 
 0.417
msrB
TIGRFAM: methionine-R-sulfoxide reductase; KEGG: nmu:Nmul_A2110 protein-methionine-S-oxide reductase; PFAM: Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family.
     
 0.400
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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