STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2020SMART: Rhodanese domain protein; KEGG: hna:Hneap_1028 rhodanese domain protein. (191 aa)    
Predicted Functional Partners:
Slit_1700
PFAM: cytochrome c class I; KEGG: tbd:Tbd_0917 monoheme cytochrome SoxX (sulfur oxidation).
  
   
 0.738
Slit_1696
PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; KEGG: mms:mma_0453 sulfur oxidation protein SoxB; Belongs to the 5'-nucleotidase family.
 
   
 0.737
Slit_1697
KEGG: tbd:Tbd_0918 diheme cytochrome SoxA (sulfur oxidation).
 
   
 0.732
Slit_1699
KEGG: tbd:Tbd_0566 transmembrane proetin, twin-arginine translocation pathway signal.
  
   
 0.720
Slit_1695
PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: dar:Daro_4041 YeeE/YedE.
 
  
 0.685
Slit_1703
KEGG: tgr:Tgr7_1401 hypothetical protein.
  
     0.669
Slit_1698
PFAM: Sulphur oxidation protein SoxZ; KEGG: tbd:Tbd_0565 sulfur compound chelating protein SoxZ.
  
   
 0.620
Slit_2178
PFAM: protein of unknown function DUF336; KEGG: tgr:Tgr7_2753 hypothetical protein.
  
     0.602
Slit_2019
KEGG: bch:Bcen2424_0216 hypothetical protein.
       0.561
Slit_0420
KEGG: dar:Daro_2990 hypothetical protein.
  
     0.557
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.