Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Slit_2036PFAM: General substrate transporter; Kinin peptide, insect; KEGG: azo:azo2850 putative sugar transport protein. (526 aa)    
Predicted Functional Partners:
Slit_2037
PFAM: protein of unknown function DUF152; KEGG: mei:Msip34_1707 protein of unknown function DUF152; Belongs to the multicopper oxidase YfiH/RL5 family.
       0.661
Slit_2038
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.661
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
       0.495
Slit_2040
PFAM: NUDIX hydrolase; KEGG: eba:ebA4673 related to NUDIX hydrolase.
       0.495
Slit_2035
KEGG: app:CAP2UW1_2066 methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; type IV pilus assembly PilZ; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein.
       0.494
crcB
CrcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
     
 0.427
Slit_2034
PFAM: zinc/iron permease; KEGG: mei:Msip34_1703 zinc/iron permease.
     
 0.422
Slit_2030
PFAM: protein of unknown function DUF190; KEGG: tbd:Tbd_1037 hypothetical protein.
       0.415
Slit_2032
PFAM: protein of unknown function UPF0153; KEGG: tmz:Tmz1t_2001 protein of unknown function UPF0153.
       0.415
rimO
MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.415
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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