STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2052YceI family protein; KEGG: eba:ebA5028 hypothetical protein; PFAM: YceI family protein; SMART: YceI family protein; Belongs to the UPF0312 family. (187 aa)    
Predicted Functional Partners:
Slit_2051
PFAM: cytochrome B561; KEGG: tau:Tola_0555 cytochrome b561.
 
  
 0.896
Slit_1349
YceI family protein; KEGG: dar:Daro_2795 YceI; PFAM: YceI family protein; SMART: YceI family protein; Belongs to the UPF0312 family.
 
     0.784
Slit_2245
PFAM: cytochrome B561; KEGG: rso:RSc0199 cytochrome b561 cytochrome transmembrane protein.
 
  
 0.540
Slit_0172
PFAM: cytochrome B561; KEGG: pmy:Pmen_1714 cytochrome b561.
 
  
 0.486
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.