STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2076PFAM: Uncharacterised conserved protein UCP015557; KEGG: app:CAP2UW1_1557 hypothetical protein. (379 aa)    
Predicted Functional Partners:
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
 
 
 0.997
Slit_2077
PFAM: protein of unknown function DUF214; KEGG: pin:Ping_3708 ABC transporter permease protein.
       0.773
Slit_2541
Lysine decarboxylase; KEGG: mms:mma_1191 arginine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein.
  
     0.695
Slit_0474
PFAM: Frataxin family protein; KEGG: bvi:Bcep1808_6980 aspartyl protease-like protein; Belongs to the frataxin family.
  
     0.477
Slit_2078
PFAM: protein of unknown function DUF214; KEGG: app:CAP2UW1_4287 protein of unknown function DUF214.
       0.476
Slit_2079
KEGG: nmu:Nmul_A0951 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.476
Slit_2080
KEGG: neu:NE0828 HlyD family secretion protein; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.476
Slit_1879
PFAM: protein of unknown function DUF28; KEGG: psb:Psyr_3028 hypothetical protein.
  
     0.452
Slit_2824
KEGG: rfr:Rfer_3457 RNA-binding S4; PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein.
  
     0.427
Slit_1291
ZipA FtsZ-binding region; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.415
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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