STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2082KEGG: mms:mma_3360 type IV pilus biogenesis protein PilE. (139 aa)    
Predicted Functional Partners:
Slit_2083
KEGG: mms:mma_3359 type IV pilus assembly related protein.
 
  
 0.914
Slit_2087
PFAM: Neisseria PilC domain protein; KEGG: mms:mma_3355 type IV fimbrial biogenesis protein PilY1.
 
  
 0.903
Slit_2084
TIGRFAM: type IV pilus modification protein PilV; KEGG: mei:Msip34_2596 hypothetical protein.
  
  
 0.878
Slit_2086
KEGG: mms:mma_3356 type IV pilus assembly protein PilX.
  
  
 0.839
Slit_0112
Type IV pilus secretin PilQ; KEGG: azo:azo3646 type 4 fimbrial biogenesis protein; TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain.
 
   
 0.757
Slit_2085
KEGG: mmb:Mmol_2271 hypothetical protein.
       0.701
Slit_0108
TIGRFAM: type IV pilus assembly protein PilM; KEGG: dar:Daro_0210 type IV pilus assembly protein PilM.
 
   
 0.700
Slit_0109
PFAM: Fimbrial assembly family protein; KEGG: tbd:Tbd_0203 type IV pilus assembly protein PilN.
 
  
 0.665
Slit_2164
KEGG: rpi:Rpic_2913 putative type 4 fimbrial biogenesis PilW-related protein transmembrane.
 
  
 0.642
Slit_2162
Tfp pilus assembly protein tip-associated adhesin PilY1-like protein; KEGG: rpi:Rpic_2911 putative type 4 fimbrial biogenesis PilY1-related protein signal peptide.
 
  
 0.634
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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