STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2085KEGG: mmb:Mmol_2271 hypothetical protein. (263 aa)    
Predicted Functional Partners:
Slit_2084
TIGRFAM: type IV pilus modification protein PilV; KEGG: mei:Msip34_2596 hypothetical protein.
       0.785
Slit_2086
KEGG: mms:mma_3356 type IV pilus assembly protein PilX.
       0.773
Slit_2083
KEGG: mms:mma_3359 type IV pilus assembly related protein.
       0.771
Slit_2087
PFAM: Neisseria PilC domain protein; KEGG: mms:mma_3355 type IV fimbrial biogenesis protein PilY1.
       0.727
Slit_2082
KEGG: mms:mma_3360 type IV pilus biogenesis protein PilE.
       0.701
Slit_2081
KEGG: net:Neut_1902 glycine oxidase ThiO; TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase.
       0.484
Slit_0493
TIGRFAM: general secretion pathway protein J; KEGG: nmu:Nmul_A1895 general secretion pathway protein J.
  
 
 0.422
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.