Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2087PFAM: Neisseria PilC domain protein; KEGG: mms:mma_3355 type IV fimbrial biogenesis protein PilY1. (1618 aa)    
Predicted Functional Partners:
Slit_2083
KEGG: mms:mma_3359 type IV pilus assembly related protein.
 
  
 0.952
Slit_2082
KEGG: mms:mma_3360 type IV pilus biogenesis protein PilE.
 
  
 0.903
Slit_2084
TIGRFAM: type IV pilus modification protein PilV; KEGG: mei:Msip34_2596 hypothetical protein.
  
  
 0.880
Slit_2086
KEGG: mms:mma_3356 type IV pilus assembly protein PilX.
  
  
 0.861
Slit_2164
KEGG: rpi:Rpic_2913 putative type 4 fimbrial biogenesis PilW-related protein transmembrane.
 
  
 0.807
Slit_0111
PFAM: Pilus assembly protein PilP; KEGG: tbd:Tbd_0205 type IV pilus assembly protein PilP.
  
  
 0.792
Slit_0110
PFAM: Pilus assembly protein PilO; KEGG: neu:NE2314 putative fimbrial type-4 assembly membrane transmembrane protein.
  
  
 0.788
Slit_0109
PFAM: Fimbrial assembly family protein; KEGG: tbd:Tbd_0203 type IV pilus assembly protein PilN.
 
  
 0.775
Slit_0108
TIGRFAM: type IV pilus assembly protein PilM; KEGG: dar:Daro_0210 type IV pilus assembly protein PilM.
 
   
 0.749
Slit_2166
KEGG: reu:Reut_A0400 N-terminal methylation site.
 
  
 0.744
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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