Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slit_2120KEGG: tbd:Tbd_1918 hypothetical protein; TIGRFAM: FimV N-terminal domain; FimV C-terminal domain; PFAM: Peptidoglycan-binding lysin domain. (902 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.815
Slit_0110
PFAM: Pilus assembly protein PilO; KEGG: neu:NE2314 putative fimbrial type-4 assembly membrane transmembrane protein.
  
  
 0.805
Slit_0109
PFAM: Fimbrial assembly family protein; KEGG: tbd:Tbd_0203 type IV pilus assembly protein PilN.
  
  
 0.792
Slit_0007
KEGG: mfa:Mfla_0188 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
  
   
 0.767
Slit_0111
PFAM: Pilus assembly protein PilP; KEGG: tbd:Tbd_0205 type IV pilus assembly protein PilP.
  
  
 0.765
Slit_0108
TIGRFAM: type IV pilus assembly protein PilM; KEGG: dar:Daro_0210 type IV pilus assembly protein PilM.
  
  
 0.762
Slit_2938
KEGG: dar:Daro_3897 CheW protein; PFAM: CheW domain protein; SMART: CheW domain protein.
  
     0.759
Slit_1281
KEGG: net:Neut_1779 putative transmembrane protein.
  
     0.741
Slit_2936
KEGG: app:CAP2UW1_3590 CheA signal transduction histidine kinase; PFAM: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; SMART: response regulator receiver; CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein.
  
   
 0.727
Slit_0112
Type IV pilus secretin PilQ; KEGG: azo:azo3646 type 4 fimbrial biogenesis protein; TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain.
  
  
 0.721
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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