STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2139Hypothetical protein; KEGG: sak:SAK_1192 chloride channel (ClC) family protein. (148 aa)    
Predicted Functional Partners:
Slit_2137
PFAM: Lytic transglycosylase catalytic; KEGG: wsu:WS1277 membrane-bound lytic murein transglycosylase C.
       0.773
Slit_2138
KEGG: mei:Msip34_1054 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.773
Slit_2140
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: mei:Msip34_1038 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
       0.773
Slit_2141
KEGG: cco:CCC13826_1539 flagellar biosynthetic protein.
       0.446
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.