STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2152KEGG: tbd:Tbd_1768 hypothetical protein. (95 aa)    
Predicted Functional Partners:
Slit_2151
Capsule synthesis protein, CapA; KEGG: rxy:Rxyl_0483 poly-gamma-glutamate synthesis protein (capsule biosynthesis protein); PFAM: Capsule synthesis protein, CapA; SMART: Capsule synthesis protein, CapA.
       0.651
Slit_2153
PFAM: UspA domain protein; KEGG: nmu:Nmul_A0904 hypothetical protein.
       0.588
Slit_2150
KEGG: vvy:VVA0153 hypothetical protein.
       0.558
Slit_2154
KEGG: rfr:Rfer_3315 putative ATP-dependent protease La, putative.
       0.404
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.