STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2153PFAM: UspA domain protein; KEGG: nmu:Nmul_A0904 hypothetical protein. (147 aa)    
Predicted Functional Partners:
Slit_0529
PFAM: UspA domain protein; KEGG: neu:NE2292 universal stress protein.
  
     0.748
Slit_2152
KEGG: tbd:Tbd_1768 hypothetical protein.
       0.588
Slit_0450
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase; KEGG: azo:azo3211 malic enzyme; PFAM: malic protein NAD-binding; malic protein domain protein; phosphate acetyl/butaryl transferase.
  
  
 0.530
Slit_2154
KEGG: rfr:Rfer_3315 putative ATP-dependent protease La, putative.
       0.524
Slit_2151
Capsule synthesis protein, CapA; KEGG: rxy:Rxyl_0483 poly-gamma-glutamate synthesis protein (capsule biosynthesis protein); PFAM: Capsule synthesis protein, CapA; SMART: Capsule synthesis protein, CapA.
  
  
 0.504
Slit_2735
KEGG: nmu:Nmul_A0747 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding.
   
  
 0.463
Slit_0866
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: lch:Lcho_1553 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
  
  
 0.451
Slit_0701
KEGG: nmu:Nmul_A0232 hypothetical protein.
  
    0.437
Slit_2150
KEGG: vvy:VVA0153 hypothetical protein.
       0.435
Slit_1160
KEGG: mgm:Mmc1_3164 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; Hpt domain protein.
     
 0.406
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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