STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2157KEGG: nmu:Nmul_A0912 hypothetical protein. (529 aa)    
Predicted Functional Partners:
Slit_2524
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.950
Slit_1594
Multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; PAC repeat-containing protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; GAF domain protein; TIGRFAM: PAS sensor protein; KEGG: bpy:Bphyt_6241 PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; histidine kinase HAMP region domain protein; GAF domain protein; histidine kinase dimerisation and phosphoacceptor region.
  
    0.732
Slit_2742
KEGG: cyb:CYB_0748 HAD family hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase.
  
    0.696
Slit_1656
PFAM: dienelactone hydrolase; KEGG: nmu:Nmul_A0914 dienelactone hydrolase.
 
  
 0.671
Slit_2158
KEGG: app:CAP2UW1_1951 ATPase AAA-2 domain protein; PFAM: ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpX chaperone family.
       0.618
Slit_2631
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
    0.558
Slit_2241
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
    0.551
Slit_2156
KEGG: nmu:Nmul_A1168 hypothetical protein.
 
     0.505
Slit_1340
SMART: cation transporting ATPase domain protein; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; KEGG: sat:SYN_02218 cation transport ATPase; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase.
 
    0.497
Slit_2155
TIGRFAM: ribosomal subunit interface protein; KEGG: tbd:Tbd_1447 SSU ribosomal protein S30P / sigma 54 modulation protein.
 
     0.433
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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