STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2165TIGRFAM: type IV pilus modification protein PilV; KEGG: rso:RSc2678 type 4 fimbrial biogenesis related transmembrane protein. (213 aa)    
Predicted Functional Partners:
Slit_2164
KEGG: rpi:Rpic_2913 putative type 4 fimbrial biogenesis PilW-related protein transmembrane.
 
  
 0.987
Slit_2166
KEGG: reu:Reut_A0400 N-terminal methylation site.
 
  
 0.961
Slit_2162
Tfp pilus assembly protein tip-associated adhesin PilY1-like protein; KEGG: rpi:Rpic_2911 putative type 4 fimbrial biogenesis PilY1-related protein signal peptide.
 
  
 0.958
Slit_2167
KEGG: rpi:Rpic_2916 putative type 4 fimbrial biogenesis transmembrane protein.
 
  
 0.947
Slit_2163
KEGG: rme:Rmet_5688 putative transmembrane protein.
  
  
 0.864
Slit_2222
PFAM: protein of unknown function DUF58; KEGG: tmz:Tmz1t_3010 protein of unknown function DUF58.
  
     0.646
Slit_0112
Type IV pilus secretin PilQ; KEGG: azo:azo3646 type 4 fimbrial biogenesis protein; TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain.
 
   
 0.615
Slit_2087
PFAM: Neisseria PilC domain protein; KEGG: mms:mma_3355 type IV fimbrial biogenesis protein PilY1.
 
  
 0.605
Slit_2120
KEGG: tbd:Tbd_1918 hypothetical protein; TIGRFAM: FimV N-terminal domain; FimV C-terminal domain; PFAM: Peptidoglycan-binding lysin domain.
  
     0.585
Slit_0711
KEGG: har:HEAR0707 hypothetical protein.
  
     0.570
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.