STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2178PFAM: protein of unknown function DUF336; KEGG: tgr:Tgr7_2753 hypothetical protein. (171 aa)    
Predicted Functional Partners:
Slit_2179
KEGG: azo:azo0016 hypothetical protein.
       0.689
Slit_1360
PFAM: protein of unknown function DUF336; KEGG: nmu:Nmul_A0738 hypothetical protein.
  
     0.688
Slit_2177
PFAM: protein of unknown function UPF0047; KEGG: dda:Dd703_0725 protein of unknown function UPF0047.
       0.645
Slit_2176
KEGG: tbd:Tbd_0067 hypothetical protein.
       0.624
Slit_2020
SMART: Rhodanese domain protein; KEGG: hna:Hneap_1028 rhodanese domain protein.
  
     0.602
Slit_0420
KEGG: dar:Daro_2990 hypothetical protein.
  
     0.510
Slit_2180
KEGG: rpf:Rpic12D_1115 MATE efflux family protein; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE.
       0.477
Slit_2175
KEGG: bte:BTH_I0090 hypothetical protein.
       0.451
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.