STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slit_2189PFAM: SMC domain protein; KEGG: bra:BRADO2738 hypothetical protein. (685 aa)    
Predicted Functional Partners:
Slit_1090
PFAM: restriction modification system DNA specificity domain; N-6 DNA methylase; KEGG: cli:Clim_0128 N-6 DNA methylase.
 
  
 0.969
Slit_2435
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.823
Slit_2436
PFAM: restriction modification system DNA specificity domain; KEGG: dar:Daro_1307 restriction modification system DNA specificity subunit.
 
    0.646
Slit_1508
KEGG: cyc:PCC7424_0974 hypothetical protein.
  
    0.598
Slit_2188
PFAM: Methyltransferase type 11; KEGG: nfa:nfa1190 hypothetical protein.
       0.542
Slit_2190
PFAM: NERD domain protein; KEGG: reh:H16_A3391 hypothetical protein.
  
    0.499
Slit_2437
PFAM: N-6 DNA methylase; KEGG: ava:Ava_3498 N-6 DNA methylase.
 
  
 0.461
Slit_0999
PFAM: permease; KEGG: psa:PST_0233 permease.
   
    0.438
Your Current Organism:
Sideroxydans lithotrophicus
NCBI taxonomy Id: 580332
Other names: S. lithotrophicus ES-1, Sideroxydans lithotrophicus ES-1, Sideroxydans lithotrophicus str. ES-1, Sideroxydans lithotrophicus strain ES-1, iron-oxidizing lithotroph ES-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.